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Biological Networks and Pathway Analysis

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Cover of 'Biological Networks and Pathway Analysis'

Table of Contents

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    Book Overview
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    Chapter 1 A Practical Guide to Quantitative Interactor Screening with Next-Generation Sequencing (QIS-Seq)
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    Chapter 2 sbv IMPROVER: Modern Approach to Systems Biology
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    Chapter 3 Mathematical Justification of Expression-Based Pathway Activation Scoring (PAS)
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    Chapter 4 Bioinformatics Meets Biomedicine: OncoFinder, a Quantitative Approach for Interrogating Molecular Pathways Using Gene Expression Data
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    Chapter 5 Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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    Chapter 6 Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated “Knowledge-Based” Platform
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    Chapter 7 Extracting the Strongest Signals from Omics Data: Differentially Expressed Pathways and Beyond
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    Chapter 8 Search for Master Regulators in Walking Cancer Pathways
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    Chapter 9 Mathematical Modeling of Avidity Distribution and Estimating General Binding Properties of Transcription Factors from Genome-Wide Binding Profiles
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    Chapter 10 A Weighted SNP Correlation Network Method for Estimating Polygenic Risk Scores
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    Chapter 11 Analysis of cis-Regulatory Elements in Gene Co-expression Networks in Cancer
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    Chapter 12 Rule Mining Techniques to Predict Prokaryotic Metabolic Pathways
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    Chapter 13 ArrayTrack: An FDA and Public Genomic Tool
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    Chapter 14 Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments
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    Chapter 15 Comprehensive Analyses of Tissue-Specific Networks with Implications to Psychiatric Diseases
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    Chapter 16 Semantic Data Integration and Knowledge Management to Represent Biological Network Associations
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    Chapter 17 Knowledge-Based Compact Disease Models: A Rapid Path from High-Throughput Data to Understanding Causative Mechanisms for a Complex Disease
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    Chapter 18 Pharmacologic Manipulation of Wnt Signaling and Cancer Stem Cells
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    Chapter 19 Functional Network Disruptions in Schizophrenia
Attention for Chapter 2: sbv IMPROVER: Modern Approach to Systems Biology
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Citations

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Readers on

mendeley
12 Mendeley
Chapter title
sbv IMPROVER: Modern Approach to Systems Biology
Chapter number 2
Book title
Biological Networks and Pathway Analysis
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-7027-8_2
Pubmed ID
Book ISBNs
978-1-4939-7025-4, 978-1-4939-7027-8
Authors

Svetlana Guryanova, Anna Guryanova

Abstract

The increasing amount and variety of data in biosciences call for innovative methods of visualization, scientific verification, and pathway analysis. Novel approaches to biological networks and research quality control are important because of their role in development of new products, improvement, and acceleration of existing health policies and research for novel ways of solving scientific challenges. One such approach is sbv IMPROVER. It is a platform that uses crowdsourcing and verification to create biological networks with easy public access. It contains 120 networks built in Biological Expression Language (BEL) to interpret data from PubMed articles with high-quality verification available for free on the CBN database. Computable, human-readable biological networks with a structured syntax are a powerful way of representing biological information generated from high-density data. This article presents sbv IMPROVER, a crowd-verification approach for the visualization and expansion of biological networks.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 12 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 12 100%

Demographic breakdown

Readers by professional status Count As %
Professor > Associate Professor 3 25%
Researcher 3 25%
Student > Master 2 17%
Student > Ph. D. Student 1 8%
Other 1 8%
Other 2 17%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 25%
Computer Science 2 17%
Agricultural and Biological Sciences 1 8%
Mathematics 1 8%
Immunology and Microbiology 1 8%
Other 1 8%
Unknown 3 25%