However, we can calculate peak-to-trough ratios (PTRs) in order to get instantaneous estimates of growth/replication rates for abundant taxa from metagenomic samples, thanks to prior work by @tkorem et al. https://t.co/9X6MYx1CAz
@gtuckerkellogg I like methods derived from simple biological instincts. E.g. https://t.co/bMI3GKlTAI, https://t.co/s7Ofyit9P8
Congratulations and good luck to our amazing @tkorem! Thanks for pioneering (with @DaveZeevi) our lab's microbiome work! https://t.co/FIIzTSVRDV https://t.co/aW4BAXuUmw
RT @npariente: Using the method below, one can estimate how subgenomic variation affects bacterial growth and fitness @sciencemagazine @seg…
Using the method below, one can estimate how subgenomic variation affects bacterial growth and fitness @sciencemagazine @segal_eran #EESmicrobiome https://t.co/ETpfzjUUWj
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples https://t.co/gUChtg8C2L
RT @drmarkgarvey: Segal - Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples #ASMicrobe http…
RT @drmarkgarvey: Segal - Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples #ASMicrobe http…
Segal - Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples #ASMicrobe https://t.co/UKRm2wS9Cn
@segal_eran explaining how to estimate bacterial growth rates from microbiome shotgun data https://t.co/rkq4eUtzTr https://t.co/jO4LnOh1Id
Comment on Korem T (2015): Growth dynamics of gut microbiota in health and disease inferred from single metageno https://t.co/oE1OoBaLs8
RT @hornistyf: 昨年先に出た似た話。こちらは完全ゲノム必要。/Growth dynamics of gut microbiota in health and disease inferred from single metagenomic... https://t…
昨年先に出た似た話。こちらは完全ゲノム必要。/Growth dynamics of gut microbiota in health and disease inferred from single metagenomic... https://t.co/UtVM1E9S92
RT @mikrobiom: #microbiota and disease: peak-to-trough ratio (PTR) instead of abundance as a new paradigm? http://t.co/qlAqbH6YXf http://t…
RT @pathogenomenick: Inferring growth dynamics of microbes from metagenomics data #ICCmg https://t.co/VBgAbliOPT
RT @pathogenomenick: Inferring growth dynamics of microbes from metagenomics data #ICCmg https://t.co/VBgAbliOPT
RT @pathogenomenick: Inferring growth dynamics of microbes from metagenomics data #ICCmg https://t.co/VBgAbliOPT
Inferring growth dynamics of microbes from metagenomics data #ICCmg https://t.co/VBgAbliOPT
RT @roxana_hickey: .@jjsso0 using methods from Korem et al. to estimate growth rates of skin bacteria from metagenome data https://t.co/GnL…
.@jjsso0 using methods from Korem et al. to estimate growth rates of skin bacteria from metagenome data https://t.co/GnL3Xi1NNi #LAMG16
@jjsso0 refs cool paper by Korem et al, Science 2015 on estimating microbiome growth rates from shotgun data https://t.co/SjvSinTpbH #LAMG16
RT @GMFHx: Growth dynamics of #gutmicrobiota in health and disease inferred from single #metagenomic samples https://t.co/GtiOwYQXav
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples. https://t.co/BkoSnODlVK
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples. https://t.co/tCvAstc3qn
RT @hornistyf: 腸内細菌について、複製起点付近と終点付近のリードの分布から、growth phaseを推測。/Growth dynamics of gut microbiota in health and disease inferred... http://t.…
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples http://t.co/ayANEKuHeI
@JuanUgaldeC @kareynlo Yes! We were just talking about doing a journal club on this paper: http://t.co/4lfeFFTvvg.
@markowenmartin @kareynlo How about http://t.co/4lfeFFTvvg for journal club? Mining metagenomic data to study gut bacteria growth dynamics.
腸内細菌について、複製起点付近と終点付近のリードの分布から、growth phaseを推測。/Growth dynamics of gut microbiota in health and disease inferred... http://t.co/65E4PQh78R
This paper rules. Dynamic information from static snapshot.s.. best microbiome advance I've read in a longgg while http://t.co/2ZCHqHYzd6
#microbiota and disease: peak-to-trough ratio (PTR) instead of abundance as a new paradigm? http://t.co/qlAqbH6YXf http://t.co/YsYyNUQwlx
HT: Itai Sharon. "Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples" http://t.co/TMYYBYKkxL
RT @KlassenLab: Inferring growing microbes in metagenomes via over-represented replication origins http://t.co/oWWpdlE3Mp … http://t.co/i6…
RT @KlassenLab: Inferring growing microbes in metagenomes via over-represented replication origins http://t.co/oWWpdlE3Mp … http://t.co/i6…
Inferring growing microbes in metagenomes via over-represented replication origins http://t.co/oWWpdlE3Mp … http://t.co/i6ERQFe9Yf …
A cool paper: Measuring bacterial growth rates using metagenomes. http://t.co/1NkVMV2SNy
really good simple idea, nice work http://t.co/PTml5gnyfn
RT @mjpallen: Growth dynamics of gut microbiota from single metagenomic samples @pathogenomenick & I saw this in STEC metagenome http://t.c…
Growth dynamics of gut microbiota from single metagenomic samples @pathogenomenick & I saw this in STEC metagenome http://t.co/DGIQeNX3rx
Gut microbe growth rate might be tied to diseases--maybe even more than static counts of who's there: http://t.co/Gj9peqjQNl #microbiome
RT @genetics_blog: Growth dynamics of healthy/disease gut microbiota inferred from single #metagenomics samples http://t.co/StioFYr7OL http…
RT @genetics_blog: Growth dynamics of healthy/disease gut microbiota inferred from single #metagenomics samples http://t.co/StioFYr7OL http…
RT @genetics_blog: Growth dynamics of healthy/disease gut microbiota inferred from single #metagenomics samples http://t.co/StioFYr7OL http…
#metagenomics Science Magazine: Sign In http://t.co/CRn7DCm8QF, see more http://t.co/x5gdmk9AHC
RT @genetics_blog: Growth dynamics of healthy/disease gut microbiota inferred from single #metagenomics samples http://t.co/StioFYr7OL http…
RT @genetics_blog: Growth dynamics of healthy/disease gut microbiota inferred from single #metagenomics samples http://t.co/StioFYr7OL http…
RT @genetics_blog: Growth dynamics of healthy/disease gut microbiota inferred from single #metagenomics samples http://t.co/StioFYr7OL http…
Growth dynamics of healthy/disease gut microbiota inferred from single #metagenomics samples http://t.co/StioFYr7OL http://t.co/WllRQxcIRO
RT @NatureBiotech: Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLr…
Check it out @whiteleylab: calculating growth rate in shotgun metagenomic samples with ori/ter ratio http://t.co/gOs3DchIhI
Microbiome growth rates from shotgun DNA. Brilliant! http://t.co/naKNNVtclH
Microbiome growth rates from shotgun DNA. Brilliant! http://t.co/naKNNVtclH
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples http://t.co/e6GuqM2zIs
Microbiome growth rates from shotgun DNA. Brilliant! http://t.co/naKNNVtclH
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Microbiome growth rates from shotgun DNA. Brilliant! http://t.co/naKNNVtclH
Microbiome growth rates from shotgun DNA. Brilliant! http://t.co/naKNNVtclH
Growth dynamics of gut microbiota in health & disease inferred from single metagenomic samples http://t.co/9Lcl8Yt9Uw http://t.co/sJCjyIL3Ja
Growth dynamics of gut microbiota in health & disease inferred from single metagenomic samples http://t.co/9Lcl8Yt9Uw http://t.co/sJCjyIL3Ja
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples http://t.co/A4qnf5Y1cP
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
It's not every day you see a new way of analyzing metagenomics data that really tells you something new: http://t.co/UQVJ6TlzNN
It's not every day you see a new way of analyzing metagenomics data that really tells you something new: http://t.co/UQVJ6TlzNN
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predict microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Patterns of sequencing read coverage across a single bacterial genome predicts microbiota growth rates http://t.co/0TtJLrapl9 #NBThighlight
Our paper's out! Growth dynamics of (gut) microbes from a single sample http://t.co/G93g9GgXB5 @DaveZeevi @JothamSuez http://t.co/lBVeNKbzbR
Our paper's out! Growth dynamics of (gut) microbes from a single sample http://t.co/G93g9GgXB5 @DaveZeevi @JothamSuez http://t.co/lBVeNKbzbR
Growth dynamics of gut microbiota in health & disease inferred from single metagenomic samples http://t.co/9Lcl8Yt9Uw http://t.co/sJCjyIL3Ja
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples. http://t.co/ewjTYki7e0
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples. http://t.co/LLcPXBmjXf
Growth dynamics of gut microbiota in health and disease inferred from single… http://t.co/V5p4TuVjJD #microbiome http://t.co/JhhsZVsQqx
Sometimes data structure really matters: getting more from NGS than just sequences: http://t.co/Bv4HZWzjhy
Single timepoint of metagenome sequencing can tell you the proliferation rate. Awesome! http://t.co/cvpAqWu6cZ
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples http://t.co/IUkgunbwoF
http://t.co/AE70X9rn46 #icanhazpdf sminot at gmail
Potentially a powerful tool for going beyond species identity in complex communities: http://t.co/R2GIi0lpia